PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00710g00416.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 480aa    MW: 53232.5 Da    PI: 6.0792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00710g00416.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.2e-14302345755
                               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               + Er+RR+ri+++++ Lr l+P+ +      K++K++iL  A++YI++Lq
  Peaxi162Scf00710g00416.1 302 ITERKRRNRIKDGLFSLRALVPNiS------KMDKVAILGDAIDYIHELQ 345
                               68*********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-187159IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.51295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.30E-14297349No hitNo description
SuperFamilySSF474595.1E-17297363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-15301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-17302363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11302345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MERALELLRP LIDSKNWDYC VVWKLGDDPS RFIEWLGCCC SGANGVDVNV KKENGGKQNF  60
TTLCRDSKVQ HPIRTKACEA LAHFPLSISL YSGIQGEVVT TNEPKWINHA EISNSNFSHI  120
TWQELKGTLV LIPVAGGLVE LYNSKLIYKD QKTIDFIINR FKLGSQGANS SKGCFSAKKD  180
DLALNSFTLQ YTDFASSTPL ISQVSESSPN PSCIEGSSTG SIPSNEVTMC HPSPSDHLSR  240
NVPLSQSIDG YFEHTELQCS GNLSKMEGTD FPLNQENYII SGDVLTMGKK RQRGPYQSKN  300
LITERKRRNR IKDGLFSLRA LVPNISKMDK VAILGDAIDY IHELQENVKL YQTELNEMAA  360
EVSNNESAEV VLSVMSEMSK VTVPTNEKTQ LSINTTKRTR MEVEVNQIGA REFLLKVSGS  420
HKPGGFTQLM EAMNYLELEV VNVSFTTSGG EILSILIAEA NVDRVLEAQK LKSSLIELTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287293GKKRQRG
2288307KKRQRGPYQSKNLITERKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1887815e-49AC188781.2 Lycopersicon esculentum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0005B15 complete sequence.
GenBankHG9755175e-49HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484583.10.0PREDICTED: transcription factor bHLH90-like isoform X3
TrEMBLK4BW610.0K4BW61_SOLLC; Uncharacterized protein
STRINGSolyc05g005300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.12e-58bHLH family protein